PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009787877.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 358aa    MW: 39276.9 Da    PI: 8.6973
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009787877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.73.7e-3569126359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      v YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee
  XP_009787877.1  69 VVIYKECLKNHAASLGGHAVDGCGEFMPSPTANpADPTSLKCAACGCHRNFHRREPEE 126
                     589******************************9*********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-2970124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.24372123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2372122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3172123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.5E-29208276IPR009057Homeodomain-like
SuperFamilySSF466898.36E-18209276IPR009057Homeodomain-like
TIGRFAMsTIGR015652.0E-26215272IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDLTNNTSTT TTTTPTLTNT TTITTTSAHI KTPEAEIETP TQIQKPKPFS FSNGVLKRKN  60
LFQHHHPVVV IYKECLKNHA ASLGGHAVDG CGEFMPSPTA NPADPTSLKC AACGCHRNFH  120
RREPEEPVVI PPPPIATAAL EYQPHHRHHP PPPPPPLPRG DHSSPNSPSP PPISSAYYPA  180
SAPHMLLALS AGFSGEKNHN PISSPVVNTT NSNGRKRFRT KFTPDQKVKM LEFAERVGWK  240
MQKRDEDLVR SFCNEIGVEK GVLKVWMHNN KNTFGKKLDQ HHLADININN NGNSTNVVNG  300
FCIVSRNNNS HHHNSTDSAE FHLHHHESSN DDNKIIDHIK SVSTANVVVG TNGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-212162731875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787877.10.0PREDICTED: zinc-finger homeodomain protein 9-like
RefseqXP_016507066.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF03e-73ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLK4B7641e-149K4B764_SOLLC; Uncharacterized protein
STRINGSolyc02g067320.1.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-65homeobox protein 34